miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Manihot esculenta



ABOUT THIS RECORD

ID: MNEST001515
species: Manihot esculenta
miRNA family: miR162
source: miRNEST

Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGAGGCAGCGGTTCATCGAT

miRNA*
CGATAAACCTCTGCATCCAGC

mismatches: 3
bulges: 0

View larger
pre-miRNA
GTTGCTGTTTTAGGTTGGGGGTTGAAGTCACTGGAGGCAGCGGTTCATCGATCTCTTCCTGGAGGATTTTGTTGTGAAATTAGCACAAACACATGAATCG
ATCGATAAACCTCTGCATCCAGCGCTCACCCTCTCCCTTTTTTCTCTCTGT


dot-bracket secondary structure
...........(((..((((((...(((..(((((.((((.((((.((((((((((....))))(((((..(((((.......)))))......))))).
)))))).)))).)))).))))).))).))))))..))).............



SIMILARITIES
miRBase ghr-MIR162a: 3e-33

PMRD ghr-miR162a: 3e-33

microPC miR162: 5e-47
UniProt no hits

RFAM MIR162_2: 1e-26
most similar mature miRNAs

Identical with: miR162 from microPC (MNEST046504)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;